rs228737208 SNP Detail

Summary

• ID
  rs228737208
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68597416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATGGGTTA GGGACTGTGT
  CTGGTGGCCA AGAATGTACA CTGAACAGAG GCTCTGGACT CACCTGGATG GCAGGAACTA
  CCTTTTTGTA AGAGTTTGCC CTCTAGGAAA GGAACAGCTC CCTTAAATGA GCTTCATTGT
  AACCTCCTGG GCAAGCACAG CTCTACATAA ACTATTACGA CATCAGTAAT TCTAATCATC
  Y
  ATTGTCCCTT GTCCCCAGTT CACAGCCACA GGGACCTCAC TGATCAGAGC TGCTATGGTG
  TCCTTCTTAT TGGCTTGGCT TCGCCCTTTT CAACAGAGGT CCACCCTGCT GAGTAAGTGC
  TCACTGATCT CTTCTGTCCA GGCTTTAGTG GACTTCAGAA GGAAGAGGCA CCGGCTCTTC
  TCTCCCGTGC TCCCAAAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358306606	MGP_WTSI_3_68494005	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228737208					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358306606	MGP_WTSI_3_68494005	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68597416 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13252	CpG island 13252	1055 bp proximal
Gm66274	predicted gene, 66274	within coordinates
Il12a	interleukin 12a	561 bp upstream
Rr578059	regulatory region 578059	1179 bp proximal
Tssr29479	transcription start site region 29479	1246 bp upstream
Tssr29480	transcription start site region 29480	1284 bp upstream
Tssr29481	transcription start site region 29481	1289 bp upstream
Tssr29482	transcription start site region 29482	1347 bp upstream
Tssr29483	transcription start site region 29483	1413 bp upstream
Tssr29484	transcription start site region 29484	1544 bp upstream
Tssr29485	transcription start site region 29485	1841 bp upstream
Tssr29486	transcription start site region 29486	1862 bp upstream
Tssr29487	transcription start site region 29487	1972 bp upstream
Tssr29488	transcription start site region 29488	1990 bp upstream