rs228749588 SNP Detail

Summary

• ID
  rs228749588
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:75424716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTACTTCT CCTTTTGCTT
  GTATTGCCCT ACCCCTCCCA CTGATAAGTA TCTGTACTTC CCCTTTTGCT TGTTCATTTA
  AACCTCGGGC CTGACTAATA CATTTGGGGC TTTGATGCAT TCCAGAACGG TTTCGCACAA
  GGCCCTCTTC CCTCTCTACC CCCCATTTGG TTCTTAGGAG GAGGTCCCCT CGAGACCCTC
  R
  AATAACTGGA CCTGCTGGAC GGGTCATCTT ACAGAGTGAG TTCCAGGACA GCCAGGGCTA
  CATAGAGAAA CCCTGTCTGG AGTGGGGGGA AAAAAAAAGG AAAATCTTCC TGGAACATCC
  AGTACAAAAT GTTCTTTGTT TATGGGATGG GGTACAGCCA AATTCTGAGA AACAGAAATT
  GAAACTCAAG TTTTACAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322267957	CHEV_7_82919854	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228749588					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:75424716 () rs orientation: forward

Symbol	Name	Function Class
AU020206	expressed sequence AU020206	within coordinates
Rr380973	regulatory region 380973	within coordinates
Tssr73053	transcription start site region 73053	895 bp upstream
Tssr73054	transcription start site region 73054	846 bp upstream
Tssr73055	transcription start site region 73055	811 bp upstream
Tssr73056	transcription start site region 73056	1638 bp downstream
Tssr73057	transcription start site region 73057	1818 bp downstream