rs228751067 SNP Detail

Summary

• ID
  rs228751067
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96142426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTGTGAA GCACATATCT
  TGTTTTTTTA AACATTATTC TTTTTGCTTT AATAAGGAAA TAAATAATTT TTTAGCTGTA
  ACATTTTAAT GGCTATGACA ATATTTTAAG TAAAGAAGTC TAAGGAACTC AGTGTGGGGA
  GGGAGGGGGA GTTGGAGAGG GGCAGAGCCT TCCTTTCAGT GAGGAAAGCC CTGATGAGGA
  R
  AATGAAGCAA CAGATGTTTC TTCTGTTACA ATTGAAGTTG TTTCATTCAA AATTCAACAG
  TAGCTGAAAT GAGGAGAGAG AGGGGGGTCA TAAATCCGAC CTAAATGGTG AATAAATAAA
  ACAGCCATTT ATCATTTATT TAAAATTCAT CCTTTATAGT CAGGATTTGA GAATCAACAT
  AACAAAAATG AGTATACATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323107368	CHEV_9_96160792	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228751067					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96142426 () rs orientation: forward

Symbol	Name	Function Class
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	1139 bp downstream
Tssr86589	transcription start site region 86589	1662 bp downstream
Tssr86590	transcription start site region 86590	1647 bp downstream
Tssr86591	transcription start site region 86591	1588 bp downstream
Tssr86592	transcription start site region 86592	1571 bp downstream
Tssr86593	transcription start site region 86593	1543 bp downstream
Tssr86594	transcription start site region 86594	1360 bp downstream
Tssr86595	transcription start site region 86595	1112 bp downstream
Tssr86596	transcription start site region 86596	1096 bp downstream