rs228757858 SNP Detail

Summary

• ID
  rs228757858
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81067777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGGTGAT GTCCTATGTA
  GAATTCAGCC AGTGGTCAGG GGTAGAGCTC TGCCTAGTAT GGCAAGCAAG GGTCCTGGGG
  AAAATGGAGA CTAAGCTACA ATTTGATTTA GCAGCTGAGA ACTGCAGTTG ATTTCCAGAC
  GTTACCAGAA GTAAAAGAGA GCAGAGAAGG ATGTCCCCAG TGTCCATAAA GAACTAATCG
  Y
  CCAGACTTTG GTCCCTGAAA GTGTGAGAGA ATAAATGTTT GGGGTTTAAC CCCCCTCCAT
  TCAGTTTCTT ATCTTTCCTG GTAACTAATA TAAGACCCCA CATAGTAGTG GATCTCCAAG
  GTTCTTTCTG CACATCCTGT GAGCACATCA AGTTCCTTCC TGCCACAAGG CCTTTGCCTG
  TACTGTCAGT ACTCTCGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381033020	MGP_WTSI_10_80694688	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228757858					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381033020	MGP_WTSI_10_80694688	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81067777 () rs orientation: forward

Symbol	Name	Function Class
Atcay	ataxia, cerebellar, Cayman type	1110 bp upstream
Cpgi1955	CpG island 1955	1211 bp distal
Cpgi1956	CpG island 1956	881 bp proximal
Rr435566	regulatory region 435566	1121 bp distal
Rr435567	regulatory region 435567	1272 bp distal
Rr435568	regulatory region 435568	620 bp distal
Rr435569	regulatory region 435569	722 bp proximal
Rr435570	regulatory region 435570	1223 bp proximal
Tssr94720	transcription start site region 94720	1204 bp upstream
Tssr98573	transcription start site region 98573	1174 bp upstream
Tssr98574	transcription start site region 98574	1118 bp upstream
Zfr2	zinc finger RNA binding protein 2	1212 bp upstream