rs228767661 SNP Detail

Summary

• ID
  rs228767661
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129445631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTAGAGGG CAGGCGAGGA
  AGCACAGGTG ACATAGTGAC CCAATGGAGG GGTGGCCTGC TGCTGTGGTA GGGGTTAGGA
  AGGGGGTAGC CTAGTGCTGT GGTAGTGGCT AGGGAGGGGG TGGCCTGCTG CTGCTGCTGT
  GGTGGTGGCT AGGGAGGGGT GGCCTGATGC TGTGGTGGTG GCTAGGGAGG GGGTAGCCTG
  A
  TGCTGTGGTG GTGGCTAGGG AGGGGTGGCC TGCTGCTGTG CTGAGGGTGA GGGTTATTGG
  GGTTCTTGGG ATGAGGAGCT CTGACTGTTG CTATGGTTTC TTCCAGGGAT GAGGCTTTGG
  GAGATCTCAC ATCCTGGGTC ACTAGGCCCC GCCTTCCTCC TCAGCTTCAT TTCTGAATTG
  AGTTGGTTTT CTCATTAGAA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LEWES/EiJ
ss355642722	MGP_WTSI_2_129429447	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LEWES/EiJ
rs228767661					SNP	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355642722	MGP_WTSI_2_129429447	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129445631 () rs orientation: forward

Symbol	Name	Function Class
Sirpa	signal-regulatory protein alpha	within coordinates
Tssr20145	transcription start site region 20145	1494 bp downstream
Tssr20146	transcription start site region 20146	19 bp upstream