rs228767880 SNP Detail

Summary

• ID
  rs228767880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74700239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATAAGTAA CCCTTTCATA
  GTTCAACATC TGTCAATGAC TGTTGCTTAA GTATTTTGCT ACTAAGTTCA AATTGTTTTC
  ACCAGGCTAG TTTTTCTCTG CATAGCCCTA GCTGATCTGA ACTCACTCTG CAGACCAGGC
  TGTCCTCATA CTCAGAGATC CACCTGCCTC AGCCTACCGA ATGGTGGGGT TAAAGAAGTG
  Y
  ACAACCGGTG CCCAGGCCTC ATCAGGTTAG TTATATCGTT AATTATCATA GCCTGTTTGA
  GAAAGCTCCT TTTGCCATCC AGCTGACTTT ATAGTTCTCT AAATTTAATA GATCCAGCGA
  CATCTGAAAC AGGGGGATCT ATTCTGCGTG GAGAGATTAT GAAAGGACTC ACACTTAGGT
  AAAGTTCTCA CTCGAAGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350128225	MGP_WTSI_1_74707654	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228767880					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350128225	MGP_WTSI_1_74707654	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74700239 () rs orientation: forward

Symbol	Name	Function Class
Cpgi388	CpG island 388	359 bp proximal
Gm70804	predicted gene, 70804	within coordinates
Rr371526	regulatory region 371526	within coordinates
Rr413230	regulatory region 413230	within coordinates
Rr413231	regulatory region 413231	315 bp proximal
Rr413232	regulatory region 413232	676 bp proximal
Rr413233	regulatory region 413233	718 bp proximal
Tssr7442	transcription start site region 7442	470 bp upstream
Tssr7443	transcription start site region 7443	553 bp upstream
Tssr7444	transcription start site region 7444	618 bp upstream
Tssr7445	transcription start site region 7445	634 bp upstream
Tssr7446	transcription start site region 7446	714 bp upstream
Tssr7447	transcription start site region 7447	1016 bp upstream
Ttll4	tubulin tyrosine ligase-like family, member 4	565 bp upstream