rs228781012 SNP Detail

Summary

• ID
  rs228781012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110366755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATAATTT TCTGGGTTGA
  TGGTATGTGC CTTTAATCCC AGCAGTCTGG AGGCAGAAGG AGGGTCCATA TAGCAAAATC
  CAGGTGAGCC AGGGCTGCAT AGTGAGATCC TGTCGTATTT TTAAATTATT GCTTCATTTT
  TATCACATCT TTAACATTTT AAGTGTGCTA TGTAATGTAT ATTAGCAGTC ATGTGAGTAT
  Y
  ATTGATAAAT ATGTAGATTG CAAGCATCAG GCTATGAAGT AGAAAGAATA AAATTTGGTG
  CTTAAATGAG ACAGCTGTGA AGTGAATGAA AACTCACAGT AGCAGTAACT CTGTGAAAGA
  GGCACAAGTC AAAAGGTGGC TCCCCAGTGT GGCTTAAAGT GGGGGTGCTT GGGTGAGGTC
  ACTGGTCAAG ACTAAAACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322398771	CHEV_7_117911062	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228781012					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110366755 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	658 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	within coordinates
Cpgi19579	CpG island 19579	535 bp proximal
Rr653308	regulatory region 653308	245 bp proximal
Rr653309	regulatory region 653309	873 bp proximal
Rr653310	regulatory region 653310	1374 bp proximal
Tssr68503	transcription start site region 68503	515 bp upstream
Tssr68504	transcription start site region 68504	558 bp upstream
Tssr68505	transcription start site region 68505	590 bp upstream
Tssr68506	transcription start site region 68506	621 bp upstream
Tssr68507	transcription start site region 68507	1067 bp upstream
Tssr68508	transcription start site region 68508	1282 bp upstream
Tssr74265	transcription start site region 74265	1753 bp downstream