rs228784553 SNP Detail

Summary

• ID
  rs228784553
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:117705880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGTAAAA TGGATTGTTC
  TGGATAGCTT GCCAGGGTTC TGCTGCCTGC CAGGGCCCCT GGGTGCTGCC CCTCTGAGGT
  TGACTCTGGC CCCTCTTGAC ACCTTCCAGG GACCTGGCAG GCAGTGGACC CATCTCTCAG
  GAAGCAGCAT AACCCTGAGG TAACTCTTGT GCAATGACAA GGCTGTCGAT GGTGGCCGGC
  R
  GTGTCTTTCA AAATCTGAAG CATAAGCTAA CAGCCCGGCT CTGAACTGTG GGCCTCCTCT
  GCAGAACATG CATTAAGCAG TTAATGAGTT AGATGGCAGG CAAGCTGGGC ACAGCACCAG
  CGGCACACTG GCACCTTAGA CCCAGGTCTC TAGTCCTCAA GGGTGTCACC CCACCCACTT
  TCCAAGGCCT ATCTGAGTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384886070	MGP_WTSI_11_117676368	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228784553					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384886070	MGP_WTSI_11_117676368	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:117705880 () rs orientation: forward

Symbol	Name	Function Class
Gm20708	predicted gene 20708	within coordinates
Rr460821	regulatory region 460821	707 bp distal
Rr460822	regulatory region 460822	within coordinates
Syngr2	synaptogyrin 2	771 bp downstream
Tk1	thymidine kinase 1	472 bp downstream
Tssr106080	transcription start site region 106080	1751 bp downstream
Tssr106081	transcription start site region 106081	1633 bp downstream
Tssr106082	transcription start site region 106082	1590 bp downstream
Tssr106083	transcription start site region 106083	1375 bp downstream
Tssr106084	transcription start site region 106084	1318 bp downstream
Tssr106085	transcription start site region 106085	1288 bp downstream
Tssr106086	transcription start site region 106086	1219 bp downstream
Tssr112040	transcription start site region 112040	1617 bp upstream
Tssr112041	transcription start site region 112041	1588 bp upstream
Tssr112042	transcription start site region 112042	1559 bp upstream
Tssr112043	transcription start site region 112043	1284 bp upstream