rs228789204 SNP Detail

Summary

• ID
  rs228789204
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48048219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCC CTGAGCCTTG AAGCCGCCCA
  Y
  CCTCGGGGAC ACCGCCCGCT GAGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321109591	CHEV_4_48061091	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228789204					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48048219 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14278	CpG island 14278	1491 bp distal
Cpgi14279	CpG island 14279	within coordinates
Cpgi14280	CpG island 14280	650 bp proximal
Gm68858	predicted gene, 68858	1021 bp upstream
Nr4a3	nuclear receptor subfamily 4, group A, member 3	within coordinates
Rr591928	regulatory region 591928	1032 bp distal
Rr591930	regulatory region 591930	531 bp distal
Rr591931	regulatory region 591931	173 bp distal
Rr591932	regulatory region 591932	470 bp proximal
Tssr37195	transcription start site region 37195	961 bp downstream
Tssr37196	transcription start site region 37196	940 bp downstream
Tssr37197	transcription start site region 37197	909 bp downstream
Tssr37198	transcription start site region 37198	892 bp downstream
Tssr37199	transcription start site region 37199	842 bp downstream
Tssr37200	transcription start site region 37200	830 bp downstream
Tssr37201	transcription start site region 37201	466 bp downstream
Tssr37202	transcription start site region 37202	331 bp downstream
Tssr37203	transcription start site region 37203	303 bp downstream
Tssr37204	transcription start site region 37204	130 bp downstream
Tssr37205	transcription start site region 37205	100 bp downstream
Tssr37206	transcription start site region 37206	56 bp upstream
Tssr37207	transcription start site region 37207	807 bp upstream
Tssr37208	transcription start site region 37208	861 bp upstream
Tssr37209	transcription start site region 37209	1707 bp upstream
Tssr41633	transcription start site region 41633	1258 bp upstream
Tssr41634	transcription start site region 41634	1069 bp upstream
Tssr41635	transcription start site region 41635	829 bp downstream
Tssr41636	transcription start site region 41636	878 bp downstream