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rs228793700 SNP Detail
Summary
  • ID
    rs228793700
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:44128991 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          CATTTACTAT TCTTTTCCCC TTCTCCTCTT CTTCTTCAAT
CTCCTGTCCT CTTCCTTACC ACTCCTCTTT TCCTTCTCCA TCTTCTTATT CATAGTCCTC
R
TTCCCCCCAT ATCTCTTCTT CCCACTTCTT CTCCTGCTCC TCATATGTTC TATTTCTCCT
TATTAATCCC CCACTGCCTG TGTCTTCTTT CCTCCTCCC                       

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156120 MGP_WTSI_7_51734937 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G A A A G A A G G G G G G G G G G A G A G G G G G A G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs228793700 SNP G G G G G G G G G G G G G G G G G G G G G G A A A G A A G G G G G G G G G G A G A G G G G G A G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156120 MGP_WTSI_7_51734937 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44128991 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2226 transcription start site region 2226 1622 bp downstream
Tssr2227 transcription start site region 2227 547 bp downstream
Tssr2228 transcription start site region 2228 511 bp upstream
Tssr2229 transcription start site region 2229 787 bp upstream
Tssr2230 transcription start site region 2230 966 bp upstream
Tssr2231 transcription start site region 2231 1099 bp upstream
Tssr2232 transcription start site region 2232 1274 bp upstream
Tssr2233 transcription start site region 2233 1307 bp upstream
Tssr2234 transcription start site region 2234 1466 bp upstream
Tssr66248 transcription start site region 66248 1991 bp downstream
Tssr66249 transcription start site region 66249 1968 bp downstream
Tssr66250 transcription start site region 66250 1949 bp downstream
Tssr66251 transcription start site region 66251 1924 bp downstream
Tssr66252 transcription start site region 66252 1893 bp downstream
Tssr66253 transcription start site region 66253 1865 bp downstream
Tssr66254 transcription start site region 66254 1817 bp downstream
Tssr66255 transcription start site region 66255 1790 bp downstream
Tssr66256 transcription start site region 66256 1741 bp downstream
Tssr66257 transcription start site region 66257 1730 bp downstream
Tssr66258 transcription start site region 66258 1687 bp downstream
Tssr66259 transcription start site region 66259 1651 bp downstream
Tssr66260 transcription start site region 66260 1544 bp downstream
Tssr66261 transcription start site region 66261 1523 bp downstream
Tssr66262 transcription start site region 66262 1516 bp downstream
Tssr66263 transcription start site region 66263 1504 bp downstream
Tssr66264 transcription start site region 66264 1480 bp downstream
Tssr66265 transcription start site region 66265 1437 bp downstream
Tssr66266 transcription start site region 66266 1420 bp downstream
Tssr66267 transcription start site region 66267 1383 bp downstream
Tssr66268 transcription start site region 66268 1367 bp downstream
Tssr66269 transcription start site region 66269 1331 bp downstream
Tssr66270 transcription start site region 66270 1296 bp downstream
Tssr66271 transcription start site region 66271 1264 bp downstream
Tssr66272 transcription start site region 66272 1212 bp downstream
Tssr66273 transcription start site region 66273 1194 bp downstream
Tssr66274 transcription start site region 66274 1189 bp downstream
Tssr66275 transcription start site region 66275 1169 bp downstream
Tssr66276 transcription start site region 66276 1149 bp downstream
Tssr66277 transcription start site region 66277 1129 bp downstream
Tssr66278 transcription start site region 66278 1085 bp downstream
Tssr66279 transcription start site region 66279 1040 bp downstream
Tssr66280 transcription start site region 66280 1018 bp downstream
Tssr66281 transcription start site region 66281 978 bp downstream
Tssr66282 transcription start site region 66282 961 bp downstream
Tssr66283 transcription start site region 66283 947 bp downstream
Tssr66284 transcription start site region 66284 935 bp downstream
Tssr66285 transcription start site region 66285 921 bp downstream
Tssr66286 transcription start site region 66286 882 bp downstream
Tssr66287 transcription start site region 66287 846 bp downstream
Tssr66288 transcription start site region 66288 821 bp downstream
Tssr66289 transcription start site region 66289 739 bp downstream
Tssr66290 transcription start site region 66290 701 bp downstream
Tssr66291 transcription start site region 66291 675 bp downstream
Tssr66292 transcription start site region 66292 643 bp downstream
Tssr66293 transcription start site region 66293 621 bp downstream
Tssr66294 transcription start site region 66294 597 bp downstream
Tssr66295 transcription start site region 66295 332 bp downstream
Tssr66296 transcription start site region 66296 161 bp downstream
Tssr66297 transcription start site region 66297 137 bp downstream
Tssr66298 transcription start site region 66298 82 bp downstream
Tssr66299 transcription start site region 66299 62 bp downstream
Tssr66300 transcription start site region 66300 39 bp downstream
Tssr66301 transcription start site region 66301 23 bp downstream
Tssr66302 transcription start site region 66302 within coordinates
Tssr66303 transcription start site region 66303 21 bp upstream
Tssr66304 transcription start site region 66304 29 bp upstream
Tssr66305 transcription start site region 66305 39 bp upstream
Tssr66306 transcription start site region 66306 73 bp upstream
Tssr66307 transcription start site region 66307 130 bp upstream
Tssr66308 transcription start site region 66308 183 bp upstream
Tssr66309 transcription start site region 66309 204 bp upstream
Tssr66310 transcription start site region 66310 242 bp upstream
Tssr66311 transcription start site region 66311 319 bp upstream
Tssr66312 transcription start site region 66312 335 bp upstream
Tssr66313 transcription start site region 66313 356 bp upstream
Tssr66314 transcription start site region 66314 364 bp upstream
Tssr66315 transcription start site region 66315 384 bp upstream
Tssr66316 transcription start site region 66316 443 bp upstream
Tssr66317 transcription start site region 66317 455 bp upstream
Tssr66318 transcription start site region 66318 500 bp upstream
Tssr66319 transcription start site region 66319 523 bp upstream
Tssr66320 transcription start site region 66320 550 bp upstream
Tssr66321 transcription start site region 66321 568 bp upstream
Tssr66322 transcription start site region 66322 588 bp upstream
Tssr66323 transcription start site region 66323 634 bp upstream
Tssr66324 transcription start site region 66324 663 bp upstream
Tssr66325 transcription start site region 66325 693 bp upstream
Tssr66326 transcription start site region 66326 734 bp upstream
Tssr66327 transcription start site region 66327 748 bp upstream
Tssr66328 transcription start site region 66328 764 bp upstream
Tssr66329 transcription start site region 66329 803 bp upstream
Tssr66330 transcription start site region 66330 822 bp upstream
Tssr66331 transcription start site region 66331 836 bp upstream
Tssr66332 transcription start site region 66332 857 bp upstream
Tssr66333 transcription start site region 66333 905 bp upstream
Tssr66334 transcription start site region 66334 917 bp upstream
Tssr66335 transcription start site region 66335 926 bp upstream
Tssr66336 transcription start site region 66336 935 bp upstream
Tssr66337 transcription start site region 66337 953 bp upstream
Tssr66338 transcription start site region 66338 1009 bp upstream
Tssr66339 transcription start site region 66339 1060 bp upstream
Tssr66340 transcription start site region 66340 1105 bp upstream
Tssr66341 transcription start site region 66341 1150 bp upstream
Tssr66342 transcription start site region 66342 1212 bp upstream
Tssr66343 transcription start site region 66343 1244 bp upstream
Tssr66344 transcription start site region 66344 1389 bp upstream
Tssr66345 transcription start site region 66345 1422 bp upstream
Tssr66346 transcription start site region 66346 1478 bp upstream
Tssr66347 transcription start site region 66347 1516 bp upstream
Tssr66348 transcription start site region 66348 1557 bp upstream
Tssr66349 transcription start site region 66349 1581 bp upstream
Tssr66350 transcription start site region 66350 1609 bp upstream
Tssr66351 transcription start site region 66351 1617 bp upstream
Tssr66352 transcription start site region 66352 1653 bp upstream
Tssr66353 transcription start site region 66353 1727 bp upstream
Tssr66354 transcription start site region 66354 1741 bp upstream
Tssr66355 transcription start site region 66355 1768 bp upstream
Tssr66356 transcription start site region 66356 1785 bp upstream
Tssr66357 transcription start site region 66357 1799 bp upstream
Tssr66358 transcription start site region 66358 1811 bp upstream
Tssr66359 transcription start site region 66359 1837 bp upstream
Tssr66360 transcription start site region 66360 1849 bp upstream
Tssr66361 transcription start site region 66361 1875 bp upstream
Tssr66362 transcription start site region 66362 1907 bp upstream
Tssr66363 transcription start site region 66363 1924 bp upstream
Tssr66364 transcription start site region 66364 1957 bp upstream
Tssr66365 transcription start site region 66365 1977 bp upstream
Tssr66366 transcription start site region 66366 1997 bp upstream
Tssr72200 transcription start site region 72200 1126 bp upstream
Tssr72201 transcription start site region 72201 616 bp upstream
Tssr72202 transcription start site region 72202 226 bp downstream
Tssr72203 transcription start site region 72203 612 bp downstream
Tssr72204 transcription start site region 72204 1208 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
07/22/2025
MGI 6.24 		The Jackson Laboratory