rs228797952 SNP Detail

Summary

• ID
  rs228797952
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:63086166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTTTAGC GTTATTTATA
  ATAATAGCTT CTGCCGAGGC AGATCAAACA CTAATGCAGA TTGTTCCTTT GCCATTCTAT
  TAGATGGCCT GTTGAAGTGA ATCAGTATTT CACCAAGATT GCATTATGCC ACTGTGTGGT
  AGAAGCAGTA TTTTTTACTT TTTTGTTACG CTGTAAATCA AACCTAGCGC CTCATACATG
  Y
  TAAGCAAGCA CTCTGACACT CAACTACACC CAACCCCAAG AACATTTAGA CAAACAAAGC
  TCACTTTTCT TATTTCTGTT TTGTTTTATC ATATATTCCT TTATTGTCTT GACTGTTTGC
  TGGTCCATCA GAAGGCTGTA GTGATTGCAG TGCAGGGTTG ATTGGGTGGC TGGCATTCGA
  ACTTAGGCTA CTTAGTTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323333187	CHEV_10_62713135	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228797952					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:63086166 () rs orientation: forward

Symbol	Name	Function Class
Gm19337	predicted gene, 19337	545 bp upstream
Gm66860	predicted gene, 66860	within coordinates
Herc4	hect domain and RLD 4	within coordinates