rs228798175 SNP Detail

Summary

• ID
  rs228798175
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:56810015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGTCATA ACTGATTTGT
  TTCATCTTTT CCTCAGACAA GCACCCTGTG TACCACTTCA GAAGAAAGGA AAAGGCTGGG
  ACATCAAAGG ACCGTGCGTG ACACTGGGTC TGAGACATCT TTTCTGGTTC GCTGTCATAT
  TTTTTTACTG TAGTCTTTTC TGACTCTAAC CCAGGTGTTC TGCGTACAAA CCCGAGTCTC
  Y
  TCTCTAAATA ACAATCAAGA TGTGAATATT GTAACAAGTT ACGAATTGTT GGCAGCTGAG
  CCATCATTCT CCCCGCGCGC TGTTTCCCTG GGATTGCTAC TTTGAGGATA GGTAGAAGGG
  GAGAGAGAAA TCTGAAATGG TTTCCCTACC AAGGTGAAAA TATATGAAAA TACATCGGGA
  TCTTTGGAAA AGCCGAACGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325859384	CHEV_19_56896073	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228798175					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:56810015 () rs orientation: forward

Symbol	Name	Function Class
1700010L13Rik	RIKEN cDNA 1700010L13 gene	323 bp upstream
Ccdc186	coiled-coil domain containing 186	Intron
Cpgi11092	CpG island 11092	54 bp proximal
Rr406045	regulatory region 406045	534 bp upstream
Rr550140	regulatory region 550140	within coordinates
Rr550141	regulatory region 550141	334 bp proximal
Rr550142	regulatory region 550142	597 bp proximal
Tssr157215	transcription start site region 157215	345 bp upstream
Tssr159886	transcription start site region 159886	497 bp downstream
Tssr159887	transcription start site region 159887	578 bp downstream