rs228798595 SNP Detail

Summary

• ID
  rs228798595
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66903492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTT GTCTTTTTTT TTTTTTCCCC
  R
  GGTTTCCTAG TGGCAGAATT AATGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319758754	CHEV_1_66910907	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228798595					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66903492 () rs orientation: forward

Symbol	Name	Function Class
Acadl	acyl-Coenzyme A dehydrogenase, long-chain	1056 bp upstream
Cpgi339	CpG island 339	594 bp distal
Rr412478	regulatory region 412478	1067 bp distal
Rr412479	regulatory region 412479	566 bp distal
Rr412480	regulatory region 412480	1399 bp proximal
Tssr12011	transcription start site region 12011	1074 bp upstream
Tssr12012	transcription start site region 12012	1048 bp upstream
Tssr12013	transcription start site region 12013	1036 bp upstream
Tssr12014	transcription start site region 12014	1018 bp upstream
Tssr12015	transcription start site region 12015	998 bp upstream
Tssr12016	transcription start site region 12016	983 bp upstream