rs228805041 SNP Detail

Summary

• ID
  rs228805041
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70824491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAAAGGA TTGCTTGTCA
  ATCAGGAGGA CCACTTTCCT CCTGCTCAGA CACAAGTGAA AATAGAGGAG GTGTGTTGGG
  AGGAGAGAGT GTGTGGTCCC TGTTAACAGT AGTGTGGAGT CTGCAGAGTG TGAATGAGTG
  AGAAGTCATG GGCAAGCGGG TCCACAGGAG CTAAGTAGTC AGCGTTCTAC CTAAGTGCTC
  Y
  TCACAAGCCA AAAATCTGAA AATATTAGTT CCATAATAAT AGAACAATAT CCTGTTTGTT
  TCAAGGGGAG GGCTAGAGGG GCAGAGCTGA GTTAACCAAG CGTTGATTAC AAACAGCTGT
  GAAGAACTCT GAAGCTTGCA GAAGGGGGTG AGGGGTGGCT GCTTTTTTGT GCCTTGTCTT
  TTGATGATTA GCCTTAGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321816173	CHEV_6_70797501	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228805041					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70824491 () rs orientation: forward

Symbol	Name	Function Class
Eif2ak3	eukaryotic translation initiation factor 2 alpha kinase 3	within coordinates
Rr631846	regulatory region 631846	215 bp proximal
Tssr56979	transcription start site region 56979	1955 bp upstream