rs228805200 SNP Detail

Summary

• ID
  rs228805200
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:63970107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATCCTGTC CCTCCATCTT
  GCACTGTCTG AAACTCCAAA GAGCACGGGA TATCAAGCCT TAGGGACCAC CTGGCCTACG
  GTGCAAAGCT GGTCCACAAT ACTTGGCCTC GTCCCTTCAG GTGACCCTAA AGGTCACCTC
  CCTGCCAAGT GACAAGCCAA GGGCTTCCAA GGTTGCAGGC GGCCGGCAAC ACGGTACCGC
  R
  CATGGCAAAA AAGAAAACAA TTCGTCCACG ATCATTCCCA ACCGGGTACA ATACCTGTGA
  GGAGGCGCGA GGAAATGGTG TGCGGGGACG CGGCCATAAC GTACTGGTGC AGCAGTCCCC
  AGGACCCCAG GACGCCTCTC ACCTCACCGG CTCCTGGGCG CCGCCATCTT GCTAGCCCGC
  CCTCTGAGTG AGGCGGGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383649290	MGP_WTSI_11_63892783	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	G	G	A	G	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228805200					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	G	G	A	G	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383649290	MGP_WTSI_11_63892783	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:63970107 () rs orientation: forward

Symbol	Name	Function Class
2810001G20Rik	RIKEN cDNA 2810001G20 gene	203 bp upstream
Cox10	heme A:farnesyltransferase cytochrome c oxidase assembly factor 10	within coordinates
Cpgi3048	CpG island 3048	within coordinates
Gm71991	predicted gene, 71991	252 bp downstream
Rr246948	regulatory region 246948	within coordinates
Tssr102116	transcription start site region 102116	197 bp upstream
Tssr102117	transcription start site region 102117	266 bp upstream
Tssr102118	transcription start site region 102118	332 bp upstream
Tssr108456	transcription start site region 108456	163 bp downstream