rs228807042 SNP Detail

Summary

• ID
  rs228807042
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123258245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGCAGAT GTTCGAAGCA
  AACCATTGGA CTGAGCACGG GGTCCCCAAA AAAGGACTTA GAGAAAGGAC TGAAGGAGTT
  GAAGGGGTTT GCAACCCCAT AGGAAGAACA ATATCAACCA AACAGACCCT CCAGAACTCT
  CAGGGTCTAA GCCATCAACA AAGGAGTACA CATGGCTCCA GCTGCATGTG TAGCAGAGGA
  Y
  GGCCTTGTCA TGCATCAGTG GGAGGAGAGT TCCTTGGTCC TATGAGGTTC GATAGATGCC
  CCAGTGTAGG GGAATTGAGG GCCAGGAGGT GGGAGTGGGT AGGTGGGTGA AGGAACACCC
  TCATAGAAGC AGGGGGAACA GGGATGTGAT AGGGTTTTTC TGGGAGGGAG GGAAAGCTGG
  AAAGGGGATA ACATTTGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369922343	MGP_WTSI_6_123231304	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228807042					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369922343	MGP_WTSI_6_123231304	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123258245 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	503 bp downstream
Tssr58808	transcription start site region 58808	1444 bp upstream
Tssr63019	transcription start site region 63019	242 bp downstream
Tssr63020	transcription start site region 63020	1207 bp downstream
Tssr63021	transcription start site region 63021	1293 bp downstream
Tssr63022	transcription start site region 63022	1328 bp downstream
Tssr63023	transcription start site region 63023	1356 bp downstream
Tssr63024	transcription start site region 63024	1459 bp downstream
Tssr63025	transcription start site region 63025	1512 bp downstream
Tssr63026	transcription start site region 63026	1523 bp downstream
Tssr63027	transcription start site region 63027	1572 bp downstream
Tssr63028	transcription start site region 63028	1585 bp downstream
Tssr63029	transcription start site region 63029	1616 bp downstream
Tssr63030	transcription start site region 63030	1646 bp downstream
Tssr63031	transcription start site region 63031	1703 bp downstream
Tssr63032	transcription start site region 63032	1727 bp downstream
Tssr63033	transcription start site region 63033	1752 bp downstream
Tssr63034	transcription start site region 63034	1771 bp downstream
Tssr63035	transcription start site region 63035	1792 bp downstream
Tssr63036	transcription start site region 63036	1846 bp downstream
Tssr63037	transcription start site region 63037	1876 bp downstream
Tssr63038	transcription start site region 63038	1913 bp downstream
Tssr63039	transcription start site region 63039	1972 bp downstream