rs228809266 SNP Detail

Summary

• ID
  rs228809266
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:22172072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTATTT GTCTCAATTA
  CTGTTTGTTA AAATTTCTCT TTTTAAAAAT CATTTGGATA TATTCACAAG CTCACTTAAT
  CTACATTTTT GTTCCTTTTA AAAAATATCA GTTATGTTTT GTTTTAATCA AAGAAAACAT
  CTCCTTTTTA AAAAAAATAT TTTTGTAGTA AGCTCAGTCT ATTTGACAAA TTTCCATTTT
  W
  AAAATATTTG CCAACTAAGT ATAAGTTAGA GCAAACATTT ATCATTTAAA GGGTATCAAA
  TGAGGATGGA AGGGCTGCCA CAGGGCTCAG GTTTTCATGC TCTTTAGAAC TCTGTATTGA
  TGTTCGTCAA ACTGACTTTC TGGCATCAGA TTCTTCCGGG GGTTTCCCGC AACAGTTTTC
  ATTGTACGGA TGGCTGGGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390504852	MGP_WTSI_14_22941226	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228809266					SNP	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390504852	MGP_WTSI_14_22941226	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:22172072 () rs orientation: forward

Symbol	Name	Function Class
Lrmda	leucine rich melanocyte differentiation associated	within coordinates
Tssr124479	transcription start site region 124479	1559 bp downstream
Tssr124480	transcription start site region 124480	159 bp upstream
Tssr124481	transcription start site region 124481	429 bp upstream
Tssr124482	transcription start site region 124482	834 bp upstream
Tssr124483	transcription start site region 124483	1224 bp upstream
Tssr124484	transcription start site region 124484	1297 bp upstream
Tssr124485	transcription start site region 124485	1773 bp upstream
Tssr124486	transcription start site region 124486	1869 bp upstream