rs228812560 SNP Detail

Summary

• ID
  rs228812560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129158878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGCTGGC CTGGAACTCC
  TGCTCCCTCT GCCTCAGCAG GGTTGACTTT TTAAAATCAA ATACACAAAT ATTTAGCCAT
  TGGAAACATT TCCTGAGAAT GTGGAGCTTC TGTCTCAAGT GCAGCTGTTG CATAGCTAGC
  TGCAGGCATT TTGAAGCCTG TCTTGTGAAT GTGGAGCTCC TGTCTCAAGT GCAGCTGTTG
  Y
  ATAACTAGCT GCAGGCATTA CACAACTTCA CTCCTTTGAA GCAGTAGCTT GTTTTATCAT
  TGAAACAGTT TTTAAGTAAG CTAAAAACCA GGCCAGCAAT ACTTCATTTC TTTGGGTTTT
  TTGAGAGATC ATTTCCAACA TTACTTTTAA ATAAAGACAG GAAAGTTATG TTCAAATTGT
  GCTATGGAAC ACATTCGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370045205	MGP_WTSI_6_129131933	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228812560					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370045205	MGP_WTSI_6_129131933	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129158878 () rs orientation: forward

Symbol	Name	Function Class
Clec2d	C-type lectin domain family 2, member d	within coordinates
Gm53342	predicted gene, 53342	within coordinates
Gm68195	predicted gene, 68195	1550 bp downstream
Rr368193	regulatory region 368193	526 bp downstream
Rr639387	regulatory region 639387	1290 bp distal
Rr639388	regulatory region 639388	1423 bp distal
Rr639389	regulatory region 639389	505 bp distal
Rr639390	regulatory region 639390	within coordinates
Rr639391	regulatory region 639391	576 bp proximal
Rr639392	regulatory region 639392	867 bp proximal
Tssr59096	transcription start site region 59096	1285 bp downstream
Tssr59097	transcription start site region 59097	1259 bp downstream
Tssr59098	transcription start site region 59098	976 bp downstream
Tssr59099	transcription start site region 59099	947 bp downstream
Tssr59100	transcription start site region 59100	902 bp downstream
Tssr59101	transcription start site region 59101	608 bp downstream
Tssr59102	transcription start site region 59102	554 bp downstream
Tssr59103	transcription start site region 59103	52 bp downstream
Tssr59104	transcription start site region 59104	7 bp upstream
Tssr59105	transcription start site region 59105	763 bp upstream
Tssr59106	transcription start site region 59106	787 bp upstream
Tssr59107	transcription start site region 59107	1017 bp upstream
Tssr59108	transcription start site region 59108	1083 bp upstream
Tssr59109	transcription start site region 59109	1196 bp upstream
Tssr63546	transcription start site region 63546	918 bp downstream