rs228821000 SNP Detail

Summary

• ID
  rs228821000
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25233918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGCTAGG AGAAATTATA
  CTCAGAATAA ACTAAAGTTC AGGTACATTC CAACATCTTA AGACAGGCTG TGTACATGAT
  GAAGCAGGAC AGAGAAACAC TCCGTTCTTT AGCAGACGCT AGGTCCAACA TAACTGTTGA
  AAACATTCCA CTTAAAAAGA AAAGCAGACA GAGCAAGGTA CCAATGATAA CAAAGAAACA
  R
  ACTGAAGGTA AAGACAGAGA TGTAAAACTC GAAGTAACAC CATAAAATGG TGCTGCCAAA
  AACGGTGTGC AATTTTCCTG TTTGGCACTG ATCTTTCAAA TACTACCTTA AGAAAACCCT
  GGCACAGAAC CACACAAGAC ACAACCCCAC GCTAAATGAT TTTATGGCAC AAGACTTCGA
  ACCTATTCAC TTTTAACCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397867875	MGP_WTSI_17_25151889	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228821000					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397867875	MGP_WTSI_17_25151889	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25233918 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8751	CpG island 8751	323 bp distal
Cpgi8752	CpG island 8752	163 bp proximal
Cramp1	cramped chromatin regulator 1	within coordinates
Ift140	intraflagellar transport 140	1138 bp upstream
Rr339341	regulatory region 339341	within coordinates
Rr405099	regulatory region 405099	816 bp upstream
Tssr143119	transcription start site region 143119	1124 bp upstream
Tssr143120	transcription start site region 143120	1399 bp upstream
Tssr143121	transcription start site region 143121	1562 bp upstream
Tssr143122	transcription start site region 143122	1637 bp upstream
Tssr146804	transcription start site region 146804	610 bp upstream
Tssr146805	transcription start site region 146805	745 bp downstream
Tssr146806	transcription start site region 146806	764 bp downstream
Tssr146807	transcription start site region 146807	797 bp downstream
Tssr146808	transcription start site region 146808	822 bp downstream
Tssr146809	transcription start site region 146809	854 bp downstream