rs228822100 SNP Detail

Summary

• ID
  rs228822100
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133856861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTGCACT GGCCCTTGGC
  ACAGCTATTT TTGGGGTGAT CCCAACTTAA CTCTACCTTT ACATTGCAAA TGACACCCCA
  CATCTTTGAA CTTTAAGAAT TCAGCTAATG AGATGGAAGA GAGTCCAGCA CCCATTCCAA
  CTGTGGATCA AGCTCTGTCA GGTTCACTAT AGGCCCCAAG AGTAGACCTG GGGCTACATA
  R
  ATAATGGCGC AGGAACAACA CAATTCTGCT GCCTGCTGAG GCAAACTGCC TGTCTGCTTC
  TGGGGAAGTC ATTTCCTCAA AGCCACAGAA ACCCAGAAGC TGCTGACCTC TGAGAGGTGT
  GCAACTTTGT AGTGACAACT GGCGGCGGTT GCTCTCTGCA ACACAGGAGT GTGGGCAGAG
  ACTAATCTGT CGCCACCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363332288	MGP_WTSI_4_133685465	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228822100					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363332288	MGP_WTSI_4_133685465	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133856861 () rs orientation: forward

Symbol	Name	Function Class
Cep85	centrosomal protein 85	308 bp downstream
Cpgi15028	CpG island 15028	430 bp distal
Gm68742	predicted gene, 68742	within coordinates
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	817 bp upstream
Tssr39535	transcription start site region 39535	1945 bp downstream
Tssr39536	transcription start site region 39536	1835 bp downstream
Tssr39537	transcription start site region 39537	1584 bp downstream
Tssr43866	transcription start site region 43866	1864 bp upstream
Tssr43867	transcription start site region 43867	1830 bp upstream
Tssr43868	transcription start site region 43868	1759 bp upstream
Tssr43869	transcription start site region 43869	1739 bp upstream
Tssr43870	transcription start site region 43870	1577 bp upstream
Tssr43871	transcription start site region 43871	1527 bp upstream
Tssr43872	transcription start site region 43872	1500 bp upstream
Tssr43873	transcription start site region 43873	1474 bp upstream
Tssr43874	transcription start site region 43874	1459 bp upstream
Tssr43875	transcription start site region 43875	850 bp upstream
Tssr43876	transcription start site region 43876	780 bp upstream
Tssr43877	transcription start site region 43877	54 bp downstream