rs228828089 SNP Detail

Summary

• ID
  rs228828089
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128581406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGTTTGT TCTGGTTTGC
  TTGCATCCTG ACCCTTCACT GCTTTGTTTT TGTTTTCATT TTTCCTCTTC CTCCTCCATC
  ACTGTCACCA CCATGCTGCA GATGAGCTTC AGTGCCTGGA ACGTGCTTCT CCGGTGCTGC
  ACCACGGATC TATACCGCTA CCCCACACCC TTCTTCTTAA CAGTATATGC GTCACCGTTA
  R
  CAAAGTCTAT CTCCCCTTCC TACATCGCCT CCTTACTCAC AGTCCAACAA ACGATTTTTT
  TCCTGAGACA AGATTTTAGT ATGTACATAG CCTAGGCTGG CAGTGAAATT GCCATCCTGG
  TTCAACCTCT CAAGAGCTGG GTTTACCGGG TTTATTGGTG TGTGCCACTC CTGCTATCAA
  CAGACACTTT TGAAGGTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382210075	MGP_WTSI_10_128182593	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228828089					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382210075	MGP_WTSI_10_128182593	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128581406 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2418	CpG island 2418	1314 bp distal
Dgka	diacylglycerol kinase, alpha	682 bp upstream
Gm31504	predicted gene, 31504	within coordinates
Gm66065	predicted gene, 66065	432 bp downstream
Rr224483	regulatory region 224483	within coordinates
Rr224484	regulatory region 224484	1794 bp proximal
Rr385480	regulatory region 385480	1982 bp downstream
Rr385481	regulatory region 385481	1788 bp upstream
Rr402364	regulatory region 402364	588 bp downstream
Tssr96440	transcription start site region 96440	715 bp downstream
Tssr96441	transcription start site region 96441	514 bp downstream
Tssr96442	transcription start site region 96442	303 bp downstream
Tssr96443	transcription start site region 96443	920 bp upstream
Tssr99941	transcription start site region 99941	1692 bp upstream
Tssr99942	transcription start site region 99942	1627 bp upstream
Tssr99943	transcription start site region 99943	1565 bp upstream
Tssr99944	transcription start site region 99944	1542 bp upstream
Tssr99945	transcription start site region 99945	1452 bp upstream
Tssr99946	transcription start site region 99946	1428 bp upstream
Tssr99947	transcription start site region 99947	1285 bp upstream
Tssr99948	transcription start site region 99948	1255 bp upstream
Tssr99949	transcription start site region 99949	650 bp upstream
Tssr99950	transcription start site region 99950	479 bp upstream
Tssr99951	transcription start site region 99951	456 bp upstream
Tssr99952	transcription start site region 99952	452 bp upstream
Tssr99953	transcription start site region 99953	415 bp upstream
Tssr99954	transcription start site region 99954	71 bp upstream
Tssr99955	transcription start site region 99955	38 bp upstream
Tssr99956	transcription start site region 99956	696 bp downstream
Tssr99957	transcription start site region 99957	763 bp downstream