rs228838673 SNP Detail

Summary

• ID
  rs228838673
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:65754690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTTTGTT GAACACAGTT
  GAATGAATTG ACTTGGACAA CTGACCACAG TATAACCATC TTAGTGTTTA TCCTGATGTG
  TTATCTAGCT TGGAAAGGAA ACACTGGAGA CACGCAACAA AGAGAGGCAA GATATATTTG
  GTTTCATGGG CTGAGAGGTT TCGTGGCTCC ATCACTTTCA TGTCTCATGG CAACACAGAG
  R
  CACGTTGATG TAAAGGTAGA GAAAAGCTGC TCACCTTGGC ATCCAGGAAT CAGAGAAAGA
  TGAAGAGGGA CCTTAATGTC CTTTAAGAGA ATGCTCATTT AATGACTTAC GTTGTCCTAT
  CAGGCTCTAT CTTTTAAGTT CTACCAGCTT CCAATAGTAG CACTGGATAA TGAATATGTC
  TATGGATGAA TCCATTGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321809787	CHEV_6_65727700	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228838673					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:65754690 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17503	CpG island 17503	935 bp proximal
Gm16838	predicted gene, 16838	within coordinates
Prdm5	PR domain containing 5	1282 bp upstream
Rr631490	regulatory region 631490	792 bp proximal
Rr631491	regulatory region 631491	1533 bp proximal
Tssr56854	transcription start site region 56854	1288 bp upstream
Tssr61222	transcription start site region 61222	1930 bp downstream
Tssr61223	transcription start site region 61223	1983 bp downstream
Tssr61224	transcription start site region 61224	1991 bp downstream