rs228842259 SNP Detail

Summary

• ID
  rs228842259
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:102987765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGTTGTG CTGAATTCAA
  AGCTATCCTG CAAGGCATAT GGCCTGTGGA CAGTGGGTCG GACACACCTG CCAAAACTTT
  CCTCAGCCCA TGCTGGATCC CGAGACAGCA ACACACTCGG GGCAAAAGTA GGGTGGAGTC
  TGAGTTATCT TAGTCTGGTG CCCAATCTGG CATGCTTATA TGCTCAGAGG GATGACCTCC
  K
  ACTCCAGGGA CTTCAAACCG AAGAAGACCA CAAGAATAGA ACAGTTACTC TGATTTGAGA
  GTAGTTTTAG AGGTTAATTC GAGCATTCAG CAACTGTTTC CTAAACTCTA GGTGAAGTGG
  AACCTCAGCT GCTTCCATGG AGTTTCCTGT GAGGGCTCAA TGTGCGGTGG GAGACTCTAG
  TGGGTACATT CGGGGTAAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323160335	CHEV_9_103012896	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228842259					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:102987765 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22229	CpG island 22229	569 bp proximal
D9Mit276	DNA segment, Chr 9, Massachusetts Institute of Technology 276	198 bp proximal
Gm46128	predicted gene, 46128	within coordinates
Rab6b	RAB6B, member RAS oncogene family	1221 bp upstream
Rr401633	regulatory region 401633	1723 bp downstream
Rr685855	regulatory region 685855	525 bp distal
Rr685856	regulatory region 685856	731 bp proximal
Rr685857	regulatory region 685857	781 bp proximal
Rr685858	regulatory region 685858	1208 bp proximal
Rr685859	regulatory region 685859	1252 bp proximal
Tssr86758	transcription start site region 86758	1160 bp upstream
Tssr86759	transcription start site region 86759	1175 bp upstream
Tssr86760	transcription start site region 86760	1309 bp upstream
Tssr86761	transcription start site region 86761	1371 bp upstream
Tssr86762	transcription start site region 86762	1425 bp upstream
Tssr86763	transcription start site region 86763	1472 bp upstream
Tssr86764	transcription start site region 86764	1483 bp upstream
Tssr86765	transcription start site region 86765	1497 bp upstream
Tssr86766	transcription start site region 86766	1506 bp upstream
Tssr86767	transcription start site region 86767	1528 bp upstream