rs228846491 SNP Detail

Summary

• ID
  rs228846491
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72427263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGGAACT CATGACCTTT
  GGAAAAGCAG TCAGTGGTCT TAACTGCTGA GCCAGTTATT ACTCTAGCCC TGGATAGGCC
  CAATATCTAA CCCTGTAATG AACATGTAAT TTAAAGACCC TGCACTGAAT GCTGATCAGG
  TTGTTTTCAA ATCTAAGTGG GCCATCGGTA CTGTTTGTGC AGCCTGGGAA GCCTGTAGCA
  Y
  CAGTATCTAC TCCAACTGCA TGTGGGCAGG GGATTGCAAC TTTGATGAAC TAGGCTATGT
  TTCTGGAAAA AACAAACAAA CAAACAAACA AACAAACAGG TGTCCTATTT GACTAAACAG
  ACTTCTATGC CTTGGTATCA CTCTTCAGGG TTGGTACCCC CATGGGATAC TACATTCATC
  ACCATGTTTT TCTGAAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320343247	CHEV_2_72434976	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228846491					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72427263 () rs orientation: forward

Symbol	Name	Function Class
Rr558998	regulatory region 558998	750 bp proximal
Tssr18356	transcription start site region 18356	626 bp upstream