rs228862141 SNP Detail

Summary

• ID
  rs228862141
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:57276503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCACTTCT GAAAGGTGAA
  CCTTTGCTAG AGGAAATGGG TCACTGCTTT TTGGTTATAG AGCCCAGCTC CATTTTCTAT
  TCTCTTGTTT TTTGACTGGA TGGCTAGCCA CTTTGCCATC CTGCCTTTAT TAGCATGGTG
  GACACGGATC TCGTATTGCT ATAAGCCAAA ATAAAGTCTT TCACGAACTT TGTCTATTAA
  Y
  TCAGAAAATA AATATAATTT TCTGCTGTGG GTGTAAAAAA TTACTATTAT TACTGTTACC
  CCAGCATCCA GAAGACTACT TGGCATGTAG TATGCCCTCA ATAAATAGAT AAGTTAGAGT
  GACTTCAATA GCTCAACACT AAATTACCAG AGCATCAGTG GCTAGGGTGG GGTGCAGGAG
  TTCTAGATTA GATAGGGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324050320	CHEV_12_58330704	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228862141					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:57276503 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4649	CpG island 4649	332 bp proximal
Mipol1	mirror-image polydactyly 1	710 bp upstream
Prps1l3	phosphoribosyl pyrophosphate synthetase 1-like 3	695 bp upstream
Rr265473	regulatory region 265473	97 bp proximal
Rr403305	regulatory region 403305	660 bp upstream
Tg(H2-K1-Ifnb1)10Seif	transgene insertion 10, Isabelle Seif	within coordinates
Tssr113518	transcription start site region 113518	1835 bp downstream
Tssr113519	transcription start site region 113519	689 bp upstream
Tssr113520	transcription start site region 113520	748 bp upstream
Tssr113521	transcription start site region 113521	797 bp upstream