rs228864677 SNP Detail

Summary

• ID
  rs228864677
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74544930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGGACGC CGAGTGGGCG
  GACCGCAGGG GTGGGGTGGG GGTGCCGGGG AAAACGGCTC AATTCAGAAG CTGTCCCGGC
  TCGTCTTACC TGCGCTAGAG GGTCCCAGCT CCGGACAAGC TTGCCGGAAG CACAAAGTTC
  CCGCGGAGGG GGTGGAGCCG AAAGGCTCGG AAGGAAGGGG CTCTACTAGC CCCAGAGAGC
  R
  AGGCCGGTCT CTCTCCTAGC ACACCTAAAC CCGCTGATGG CGGGAACTAT GACTACACGC
  AAACACGTAC GGACGCACGC ACTCTCGACG CAACCAGTCC AGGCGCGTGC GCGTAAGCGC
  GCAAGTCCCG CCCCTCAAGC ATTCGCTCTG CCCCTCACCA TGCCCAGCCC CTAACCCGGG
  CGGCCCCGCC CCCGCCGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350125620	MGP_WTSI_1_74552345	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228864677					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350125620	MGP_WTSI_1_74552345	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74544930 () rs orientation: forward

Symbol	Name	Function Class
Cnot9	CCR4-NOT transcription complex, subunit 9	287 bp upstream
Cpgi385	CpG island 385	within coordinates
Rr396106	regulatory region 396106	4 bp upstream
Rr413210	regulatory region 413210	within coordinates
Rr413211	regulatory region 413211	22 bp proximal
Rr413212	regulatory region 413212	298 bp proximal
Rr413213	regulatory region 413213	873 bp proximal
Tssr7425	transcription start site region 7425	252 bp upstream
Tssr7426	transcription start site region 7426	273 bp upstream
Tssr7427	transcription start site region 7427	340 bp upstream
Tssr7428	transcription start site region 7428	538 bp upstream
Tssr7429	transcription start site region 7429	607 bp upstream
Tssr7430	transcription start site region 7430	931 bp upstream
Tssr12315	transcription start site region 12315	58 bp upstream
Tssr12316	transcription start site region 12316	16 bp downstream
Usp37	ubiquitin specific peptidase 37	within coordinates