rs228865670 SNP Detail

Summary

• ID
  rs228865670
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41496219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGTTTATG GCTTCCCACA GAACGCAGTG AGATTAGAAT
  TGAGCGACTG TAACAAAGGG TGATTTGGTG ATTTTGTAGG GTTTTTCTGT TTTTTTTTTC
  Y
  TTTTTTTTTT TTCTGGAGGG GAAAACAGAT GATTTAGAAA GTGTTAGGAA CATATCAAGC
  CCCAGGGAAA GAAAAACGTT TGATTGGTAT TAATTAAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322927337	CHEV_9_41393006	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228865670					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41496219 () rs orientation: forward

Symbol	Name	Function Class
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677068	regulatory region 677068	364 bp distal
Rr677069	regulatory region 677069	within coordinates
Tssr84528	transcription start site region 84528	1881 bp downstream
Tssr84529	transcription start site region 84529	508 bp downstream
Tssr84530	transcription start site region 84530	468 bp upstream
Tssr84531	transcription start site region 84531	1562 bp upstream