rs228866532 SNP Detail

Summary

• ID
  rs228866532
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152776838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCTTAAGA TTAAGAACTG TCCTGGTAGT
  TTCTATTTTT TTCTACTGCA CCTATATATT CACAGCTCAC TGTAAAGTTT ACTTAATGCA
  GTAATAAGGG TAACAGAGGA AAAAAAAGAG AATGCCACCT TATAATATCA GGCATACACA
  Y
  TGTGCTAAAC TCTGGAATTC ATGCATCAAA GATTCAGAGA TCCCACCACT CTCTCTCCAG
  TGTAATGAAT AACTACTTTC AAAGACAGAA TAGCCACTCT GTTTACCACA GAACAACATC
  AATTCTCTTG CAATATAAAT ATATATATGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320068815	CHEV_1_154748217	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228866532					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152776838 () rs orientation: forward

Symbol	Name	Function Class
Cpgi860	CpG island 860	646 bp proximal
D1Mit502	DNA Segment, Chr 1 Massachusetts Institute of Technology 502	557 bp proximal
Rr396386	regulatory region 396386	1240 bp upstream
Rr420557	regulatory region 420557	390 bp proximal
Rr420558	regulatory region 420558	1525 bp proximal
Smg7	SMG7 nonsense mediated mRNA decay factor	Intron
Tssr9437	transcription start site region 9437	1757 bp upstream
Tssr9438	transcription start site region 9438	1810 bp upstream
Tssr14242	transcription start site region 14242	1541 bp downstream
Tssr14243	transcription start site region 14243	1649 bp downstream
Tssr14244	transcription start site region 14244	1670 bp downstream
Tssr14245	transcription start site region 14245	1976 bp downstream