rs228867142 SNP Detail

Summary

• ID
  rs228867142
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113618804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGAGGGA GGCAGGGGTT
  GGTGGGTAAG AAAGCCTATT ACACAGATGT GTAATTCCCG AATGTAGGAA GTAGAGGTAG
  GAAGATCAGG ATGGAATTCC ACTCCGGCCT GGGCTACTTT TGAGGGTCTG TCTCAAAAAG
  CCAAAAACCA AGTAAGCAGC AAGCAATCAA ATGATAAACA AACAAACCCA TTATCAACCA
  C
  CACATAATCC ACACATTTAA GGAGCACCTC TGTGAGTGCT CACACACACT CACGTGCACA
  CCATACATCC CGCCGCCCCT GCCCCCTCCG CTCTAGGTGT TTTCTGTTGT AGCATTTTAT
  GTGAGTGGGA CCATCCTGCG TGCACTGTCC TTTGCGAATG GCTTCAGCAT TTAGCAAGTC
  TTAAAGGGTC ATCCACGTTG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911281	CHEV_6_113591837	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228867142					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113618804 () rs orientation: forward

Symbol	Name	Function Class
Gm43964	predicted gene, 43964	283 bp upstream
Irak2	interleukin-1 receptor-associated kinase 2	within coordinates