rs228871640 SNP Detail

Summary

• ID
  rs228871640
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:42311713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCAGCAC TCCTCCCATT
  GGTTTTTTTT CTCCTCCTCG GACTCTGGTT CCCACTGCTC CCCTCCCCAC CCCTAGCGCT
  CCCACCCCAC CCCCACCTCC TCCGCTTGTC CCAGGCAGGG GATTGCTATT CTTAAGGAAA
  TAAAGTTCAA CTCCTTGCCC CTTTCAACTG GCTTAGACCG GGAGGAGAAG GGTTTCAGGA
  R
  CCAATCTTCC TCCCTACACC CTACTCCTAT TTTTCTTTTT AATATTTAAG GGGACACACA
  CACACACTCT CTCTCTCTCT CTCTCTCTCC CTCTCTCTAA AATCCCACCA CGTCGTGAGG
  TGCAACTACC TCCTAGAACA GAAACTTACC AGACGCTCTG GTTGCTTTTG TCTTAAAGAA
  AGAAAGAAAA AAAACCAACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383143990	MGP_WTSI_11_42234388	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228871640					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383143990	MGP_WTSI_11_42234388	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:42311713 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2744	CpG island 2744	383 bp distal
Gabrb2	gamma-aminobutyric acid type A receptor subunit beta 2	within coordinates
Gm34591	predicted gene, 34591	within coordinates
Rr445405	regulatory region 445405	1119 bp distal
Rr445406	regulatory region 445406	within coordinates
Tssr100974	transcription start site region 100974	1167 bp downstream
Tssr100975	transcription start site region 100975	1101 bp downstream
Tssr100976	transcription start site region 100976	931 bp downstream
Tssr100977	transcription start site region 100977	443 bp downstream
Tssr100978	transcription start site region 100978	107 bp downstream
Tssr100979	transcription start site region 100979	31 bp downstream
Tssr100980	transcription start site region 100980	347 bp upstream
Tssr100981	transcription start site region 100981	372 bp upstream
Tssr100982	transcription start site region 100982	399 bp upstream
Tssr100983	transcription start site region 100983	436 bp upstream