rs228878651 SNP Detail

Summary

• ID
  rs228878651
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:131567281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ccatggtga acactggctg ctcttctaga
  gaacttgagt tgaattccca gcacatatat ggcagctcaa accatctgta actcaagttc
  caggggaccc aagaccctct tctagcctcc ctgaatacca ggcacatgca tggtacacag
  G
  cacacatgca ggcaagacac caatgcacat aaaaacaaaa tcattttaaa attaaaaata
  aattctaata taaactctta tatatgtaca ttaattatat ataatatctt aattatatat
  tatatacaca tattatacat tatatattat                                 
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319974772	CHEV_1_133536120	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228878651					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131567281 () rs orientation: forward

Symbol	Name	Function Class
Ctse	cathepsin E	Intron
Rr366988	regulatory region 366988	1146 bp downstream
Rr418150	regulatory region 418150	1039 bp distal
Rr418151	regulatory region 418151	101 bp distal
Tssr8635	transcription start site region 8635	1247 bp downstream
Tssr8636	transcription start site region 8636	1205 bp downstream
Tssr8637	transcription start site region 8637	1180 bp downstream
Tssr8638	transcription start site region 8638	1139 bp downstream
Tssr8639	transcription start site region 8639	1059 bp downstream
Tssr8640	transcription start site region 8640	1047 bp downstream