rs228885279 SNP Detail

Summary

• ID
  rs228885279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:94562343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTTCTGA ACGATCCTTG
  GCGGGAGCAC CCCAGAAGCT CCTTGCTCTT CCTGTCCTCT CTCCTCTCTT TGTCATAGAG
  TCTCATGTAG CCTAGTCTTA CCTTGAACTC TTCATCATCT CTCAAAGCCT CCATCCTTCA
  AGGGCTGGGA TTACACATCA CTACCTCTCT GCTCTTTCAT GCTCTGACAT GGTGTAGCTG
  Y
  CTGCCAGACA TCTGCTGGAT GACAGTTGTG TAGAAAGCCC GCAAGGACAG GAACATCACA
  GCATTTGTTG AGGTCCCCCT TCTCTAGGAC ACTTTAAAAT CCCTGTGATG GGTGAACTAC
  ATAGCAGACC CCTTTCCTCC TGACTTCAAA GGAGTTTGCG CTTAGTTGGA AATAATCCAA
  CTACAAGTCT GCCTAAAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323093471	CHEV_9_94580709	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228885279					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:94562343 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr383780	regulatory region 383780			within coordinates
Rr684730	regulatory region 684730			63 bp proximal
Slc9a9	solute carrier family 9 (sodium/hydrogen exchanger), member 9			Intron
				Noncoding-Transcript-Variant