rs228889168 SNP Detail

Summary

• ID
  rs228889168
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:23631065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCTTAGG CACTGTAGAG
  GCACGATAGT CAGACCGAAC TTCCATCCAT TCCAAGGAAC AGAGTGGGAT GGCGGAGGGC
  TGAGGCAGCG CTGCGCGTGC CCAAGCCAAT GTTTGCCGAA GCCCTGCCAG CCGTGCTCCC
  CAGTCCAAGC CCCACCGACA TTCCCCATAG ATGACAGCAG AGAAAGGCTT CTTCTTGGCT
  Y
  CGGGGGACAG GAAGCCATGG CCTCTCCTCC TGGTGCCTCT GCTGGAGCCC TGTTCTTCTC
  AAATGTTGTC CTGACGACTT GACCATCTCT CCTTCTCTTC CCCTCTCTTT CCAGATCATT
  CGCAAAGTCG TCCGGCAGGT AGACTCGTCT GGTGCCATCG ACACCCAGCA GCACGAGGAG
  GTGATTGTCG AGGGTCCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373947154	MGP_WTSI_8_24251521	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228889168					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373947154	MGP_WTSI_8_24251521	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:23631065 () rs orientation: forward

Symbol	Name	Function Class
Ank1	ankyrin 1, erythroid	within coordinates
D8Rck1	DNA segment, Chr 8, Rockefeller University 1	316 bp proximal
Gm15816	predicted gene 15816	within coordinates
Mir486	microRNA 486	1506 bp upstream
Mir3107	microRNA 3107	1524 bp downstream
Rr186384	regulatory region 186384	664 bp distal
Rr186385	regulatory region 186385	1935 bp proximal
Tssr76616	transcription start site region 76616	1988 bp downstream
Tssr76617	transcription start site region 76617	1973 bp downstream
Tssr76618	transcription start site region 76618	1881 bp downstream
Tssr76619	transcription start site region 76619	1008 bp downstream
Tssr76620	transcription start site region 76620	922 bp downstream
Tssr76621	transcription start site region 76621	881 bp downstream
Tssr76622	transcription start site region 76622	1930 bp upstream