rs228898742 SNP Detail

Summary

• ID
  rs228898742
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86287973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGCGGGGGG AACGAGAGAG TTGTCTGGCG
  TTGCTTTAAA TGGATTGCAA CCAACTGGTT CCAAGCATAG CACACAGGCG CCCTTCATCA
  GCTAACAACA TCCACTAGAA ATGACCTGTG GAGTTTTCGT CCGGAGttga gataggactt
  Y
  attctttact gtcctagagc acacatgtag accatgttag cctcgacctg tatcggcacg
  cctggcccga cctAGGAGAT GTTAttttat gagacaggtt ttctctgtgt attcctggct
  gccctgggac tcacgctgta gtccaggctg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319828137	CHEV_1_88256826	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228898742					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86287973 () rs orientation: forward

Symbol	Name	Function Class
C130036L24Rik	RIKEN cDNA C130036L24 gene	within coordinates
Cpgi503	CpG island 503	within coordinates
Gm71192	predicted gene, 71192	286 bp upstream
Ncl	nucleolin	851 bp upstream
Rr396146	regulatory region 396146	635 bp downstream
Tssr7749	transcription start site region 7749	661 bp downstream
Tssr7750	transcription start site region 7750	559 bp downstream
Tssr12787	transcription start site region 12787	1770 bp upstream
Tssr12788	transcription start site region 12788	1254 bp upstream
Tssr12789	transcription start site region 12789	1205 bp upstream
Tssr12790	transcription start site region 12790	870 bp upstream
Tssr12791	transcription start site region 12791	765 bp upstream
Tssr12792	transcription start site region 12792	285 bp upstream