rs228902661 SNP Detail

Summary

• ID
  rs228902661
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:51702562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTATATAA TTGAGAACAA TTGAGCAAAT
  AATATTAAAT GTTTGCTTCC TGGCCTTTGG GCTAACATCA TGCTAAAAAG AAATGAAGGG
  GTTTCCAAGT ACAGCACGTT ATGTTAACCA TATACACATC TGTGCGCATC AGCTCCCCGA
  R
  CCCCAGCTAT TTCCTATCTC ACTATGCCCA CCAAACAACC CCTCACTTTA ACAACCCCTT
  ACTTACTTAC Tttctttttt ttccagagac agggtttctc tgtgtagtcc tggctgtcct
  ggaactcact ctgtagacca ggctggcctc                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323669279	CHEV_11_51625237	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228902661					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:51702562 () rs orientation: forward

Symbol	Name	Function Class
Jade2	jade family PHD finger 2	1720 bp downstream
Rr446697	regulatory region 446697	1605 bp distal
Rr446699	regulatory region 446699	1697 bp distal
Rr446700	regulatory region 446700	299 bp distal