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rs228913016 SNP Detail
Summary
  • ID
    rs228913016
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr11:94842194 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGTCCACCGA GGCCTCCCAG
AACATCACCT ATCACTGCAA GAACAGCGTA GCCTACATGG ACCAGCAGAC TGGCAACCTC
AAGAAGGCCC TGCTCCTCCA GGGATCCAAC GAGATCGAGC TCAGAGGCGA AGGCAACAGT
CGCTTCACCT ACAGCACCCT TGTGGACGGC TGCACGGTGA GTCCCCCAGA CTGGGTCCAG
S
CTGTCTCTTT GGGCATCTGG TTTAGCCTTC TGGCAGAACA GAGTGAGCCT CACTTCATTC
CTACCTTGGT AATGACCCTC TCCCGCTGTC TTCATTCACA CCAGAGTCAC ACCGGAACTT
GGGGCAAGAC AGTCATCGAA TACAAAACCA CCAAGACCTC CCGCCTGCCC ATCATCGATG
TGGCTCCCTT GGACATTGGT                                            

S = C/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss384336267 MGP_WTSI_11_94812682 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C G G C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs228913016 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C G G C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss384336267 MGP_WTSI_11_94812682 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:94842194 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Col1a1 collagen, type I, alpha 1 within coordinates
D11Lis1 DNA segment, Chr 11, Lisse 1 1950 bp proximal
Tssr3647 transcription start site region 3647 613 bp upstream
Tssr104261 transcription start site region 104261 1934 bp downstream
Tssr104262 transcription start site region 104262 1194 bp downstream
Tssr104263 transcription start site region 104263 1061 bp downstream
Tssr104264 transcription start site region 104264 1039 bp downstream
Tssr104265 transcription start site region 104265 1013 bp downstream
Tssr104266 transcription start site region 104266 1001 bp downstream
Tssr104267 transcription start site region 104267 934 bp downstream
Tssr104268 transcription start site region 104268 906 bp downstream
Tssr104269 transcription start site region 104269 893 bp downstream
Tssr104270 transcription start site region 104270 872 bp downstream
Tssr104271 transcription start site region 104271 818 bp downstream
Tssr104272 transcription start site region 104272 624 bp downstream
Tssr104273 transcription start site region 104273 530 bp downstream
Tssr104274 transcription start site region 104274 512 bp downstream
Tssr104275 transcription start site region 104275 503 bp downstream
Tssr104276 transcription start site region 104276 492 bp downstream
Tssr104277 transcription start site region 104277 218 bp downstream
Tssr104278 transcription start site region 104278 197 bp downstream
Tssr104279 transcription start site region 104279 140 bp downstream
Tssr104280 transcription start site region 104280 128 bp downstream
Tssr104281 transcription start site region 104281 114 bp downstream
Tssr104282 transcription start site region 104282 44 bp downstream
Tssr104283 transcription start site region 104283 93 bp upstream
Tssr104284 transcription start site region 104284 118 bp upstream
Tssr104285 transcription start site region 104285 187 bp upstream
Tssr104286 transcription start site region 104286 209 bp upstream
Tssr104287 transcription start site region 104287 236 bp upstream
Tssr104288 transcription start site region 104288 258 bp upstream
Tssr104289 transcription start site region 104289 299 bp upstream
Tssr104290 transcription start site region 104290 345 bp upstream
Tssr104291 transcription start site region 104291 354 bp upstream
Tssr104292 transcription start site region 104292 392 bp upstream
Tssr104293 transcription start site region 104293 540 bp upstream
Tssr104294 transcription start site region 104294 577 bp upstream
Tssr104295 transcription start site region 104295 635 bp upstream
Tssr104296 transcription start site region 104296 654 bp upstream
Tssr104297 transcription start site region 104297 687 bp upstream
Tssr104298 transcription start site region 104298 725 bp upstream
Tssr104299 transcription start site region 104299 753 bp upstream
Tssr104300 transcription start site region 104300 773 bp upstream
Tssr104301 transcription start site region 104301 897 bp upstream
Tssr104302 transcription start site region 104302 909 bp upstream
Tssr104303 transcription start site region 104303 923 bp upstream
Tssr104304 transcription start site region 104304 962 bp upstream
Tssr104305 transcription start site region 104305 987 bp upstream
Tssr104306 transcription start site region 104306 1002 bp upstream
Tssr104307 transcription start site region 104307 1018 bp upstream
Tssr104308 transcription start site region 104308 1088 bp upstream
Tssr104309 transcription start site region 104309 1108 bp upstream
Tssr104310 transcription start site region 104310 1153 bp upstream
Tssr104311 transcription start site region 104311 1249 bp upstream
Tssr104312 transcription start site region 104312 1319 bp upstream
Tssr104313 transcription start site region 104313 1335 bp upstream
Tssr104314 transcription start site region 104314 1751 bp upstream
Tssr110222 transcription start site region 110222 470 bp upstream
Tssr110223 transcription start site region 110223 111 bp upstream
Tssr110224 transcription start site region 110224 47 bp upstream
Tssr110225 transcription start site region 110225 141 bp downstream
Tssr110226 transcription start site region 110226 174 bp downstream
Tssr110227 transcription start site region 110227 213 bp downstream
Tssr110228 transcription start site region 110228 225 bp downstream
Tssr110229 transcription start site region 110229 285 bp downstream
Tssr110230 transcription start site region 110230 316 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory