rs228918981 SNP Detail

Summary

• ID
  rs228918981
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92473375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATC CTTTATATCG TATACATACA
  Y
  ACACACATAT AAATATATTA TATAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321612252	CHEV_5_92754542	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228918981					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92473375 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	within coordinates
Rr614603	regulatory region 614603	1879 bp distal
Tssr1547	transcription start site region 1547	1286 bp downstream
Tssr47288	transcription start site region 47288	1737 bp downstream
Tssr47289	transcription start site region 47289	1727 bp downstream
Tssr47290	transcription start site region 47290	1712 bp downstream
Tssr47291	transcription start site region 47291	1670 bp downstream
Tssr47292	transcription start site region 47292	389 bp downstream
Tssr47293	transcription start site region 47293	1249 bp upstream
Tssr47294	transcription start site region 47294	1286 bp upstream
Tssr51867	transcription start site region 51867	1808 bp upstream
Tssr51868	transcription start site region 51868	1762 bp upstream
Tssr51869	transcription start site region 51869	1720 bp upstream
Tssr51870	transcription start site region 51870	1670 bp upstream
Tssr51871	transcription start site region 51871	1635 bp upstream
Tssr51872	transcription start site region 51872	382 bp upstream
Tssr51873	transcription start site region 51873	1274 bp downstream
Tssr51874	transcription start site region 51874	1299 bp downstream