rs228920610 SNP Detail

Summary

• ID
  rs228920610
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177809259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGACCTA ACAGTAATTT
  CATTTCCCTT TCTAACCTGT TTCTTCCTCA AATGTTTGAT ATATTATGAA TAGCATACTA
  TCTACCCAAA TGTGTGAAAA ATCTAGGACC TATTTTTGAG AGTGTACCCA ACAGAAAGAA
  ACTCAAGCAA TTTTTATTTT TTTAAAGAGT TATTTACTTT ATTTATCTGA GTACATTGTA
  K
  CTGTCTTCAG ACATACCAGA AGAGGGCATC TGATCCCAAA TATAGATGGT TGTTACCCAC
  CATGTGGTTG CTGGGACTTG AACTCAGGAC CTCTGGAAGA GCAGCCAGTG CTCTTAACCA
  CTGAGCCATC TCTCCAGCTC TCAAGCAATC TTTTAAGAGA CTTATGTACA TATTCATGTC
  GTTCCTTGGC TCAAACCCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	PL/J	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ
ss352531600	MGP_WTSI_1_179911824	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	PL/J	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ
rs228920610					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352531600	MGP_WTSI_1_179911824	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177809259 () rs orientation: forward

Symbol	Name	Function Class
Catspere2	cation channel sperm associated auxiliary subunit epsilon 2	1730 bp upstream
Cpgi1085	CpG island 1085	1395 bp proximal
Gm69850	predicted gene, 69850	within coordinates
Rr14372	regulatory region 14372	1459 bp distal
Rr25806	regulatory region 25806	2 bp distal
Rr29061	regulatory region 29061	1141 bp proximal
Rr396636	regulatory region 396636	1351 bp upstream
Tssr10371	transcription start site region 10371	1734 bp upstream
Tssr10372	transcription start site region 10372	1773 bp upstream