rs228923084 SNP Detail

Summary

• ID
  rs228923084
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:33595595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAAAGGT TTAGCAACTT
  AAAAGTAGAC CCAAGTGATA AAAATAGATT GTTTTCTGGC TGCTCTTTGT TCCCAGACAT
  ACTACTGGCA GTATATTTGC AATCAAGACA GCAGAGCAAG AATCAGCCTT CCACCGTAGT
  GTAATGCCTC AGAGTGGATA TTTTTGGAAA TGGCACTGCA TTACATAACC TTCCGTGTTT
  W
  AAAAAAAAAA AAAAAAAAAA ACCTACACAA GGGAGAAAGT CAGGAATATA CACCATTATG
  CCCTCTCCCC AAAGCAAATA AACATTAATG TACATGCTGC AGTGGTTTCC CGCTCCACCT
  TTATCCCATT AGAACACAAC TCTTTTGTTA ATGCAAGTTA AGGAAAAATT CAGATGAATG
  GAAAAACTAG AAGTTCTCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325579794	CHEV_18_33622196	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228923084					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:33595595 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9808	CpG island 9808	961 bp proximal
Gm10549	predicted gene 10549	1621 bp upstream
Nrep	neuronal regeneration related protein	within coordinates
Rr352671	regulatory region 352671	within coordinates
Tssr152760	transcription start site region 152760	within coordinates
Tssr152761	transcription start site region 152761	873 bp downstream
Tssr152762	transcription start site region 152762	908 bp downstream
Tssr152763	transcription start site region 152763	1073 bp downstream
Tssr152764	transcription start site region 152764	1100 bp downstream
Tssr152765	transcription start site region 152765	1221 bp downstream
Tssr152766	transcription start site region 152766	1279 bp downstream
Tssr152767	transcription start site region 152767	1316 bp downstream
Tssr152768	transcription start site region 152768	1465 bp downstream
Tssr152769	transcription start site region 152769	1823 bp downstream