rs228923715 SNP Detail

Summary

• ID
  rs228923715
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113617382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCTGGC CTAGAACTCA
  TTACCTAGCT AAGAATGACC TTGAATTTCT GGTCTTCCTA GTGACCTCTC TCGAGTTGCT
  GGGATTATGT GTCACCATGC CTGACTTCAG TAATATATTG TTTAATTAAG ATGTTTACGA
  TACTGGAGGC TGGCAAGATT GCTCAATGGG TGGAGGCACT GAATATCAAG CCCGTGGACC
  Y
  GTGTTTTATC CCTGGAACCC TTGTAAAGCT AGAAGGGGAG AGCCCACTCC ACACAGTTGC
  CCCGTGACCC TACCCAGGCG CACTTACTAC AATGAGTATC TATTACACAG CTATACTTGA
  TACATAAAGT GGACATGTCT TGTGTTGTCC TGCCAGTTTG GATATATATT ATGCATGCGA
  GGAATCGGAT GTTCCTCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911264	CHEV_6_113590415	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228923715					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113617382 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17852	CpG island 17852	1651 bp distal
Gm43964	predicted gene, 43964	141 bp downstream
Irak2	interleukin-1 receptor-associated kinase 2	within coordinates
Rr399834	regulatory region 399834	1844 bp downstream
Rr636556	regulatory region 636556	1883 bp distal
Rr636558	regulatory region 636558	1965 bp distal
Rr636559	regulatory region 636559	888 bp distal
Tssr58237	transcription start site region 58237	1877 bp downstream
Tssr62463	transcription start site region 62463	1044 bp upstream