rs228924798 SNP Detail

Summary

• ID
  rs228924798
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5846515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATAAAACA TCTTAGCTAT
  GGTTTTAATG TTAAATTACA GGCAAGGGGA AAATTGATGG CCTTTTCTGG TGCAACCCAC
  AGGACCTTGG CACCATGGTT ACCTTGAAAC CGATATGCAA CGTGACCTCA AGGATCCAGC
  TACTGGCTGC ATCAAGGTGA GGGGTGAAGG GTCTGTGATT AGGCCAAAGG CCCATGGTGG
  Y
  GATGTGGCAG AGAAATCACT TGTGGGGAGA CCTTGTAACA GGATTCTGGA AAAGCTGGGG
  AAACTGGTTG CCCGCTTTCC CCCTTTTCCC TCCCCTGCAA GCACAACTTG AGGTTTGGGC
  TGGTAACCGC TGCTATAAAA ACAGCCTTTT TTCCAGATGT TAAAACAAGC CCAGGGCCTC
  TCAAGTATTT TCTTTGGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401662562	MGP_WTSI_19_5796487	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228924798					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401662562	MGP_WTSI_19_5796487	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5846515 () rs orientation: forward

Symbol	Name	Function Class
Malat1	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	within coordinates
Mascrna	Malat1-associated small cytoplasmic RNA	506 bp upstream
Tssr5415	transcription start site region 5415	347 bp downstream
Tssr5416	transcription start site region 5416	823 bp downstream
Tssr157645	transcription start site region 157645	106 bp upstream
Tssr157646	transcription start site region 157646	4 bp upstream
Tssr157647	transcription start site region 157647	58 bp downstream
Tssr157648	transcription start site region 157648	224 bp downstream
Tssr157649	transcription start site region 157649	324 bp downstream
Tssr157650	transcription start site region 157650	383 bp downstream
Tssr157651	transcription start site region 157651	437 bp downstream
Tssr157652	transcription start site region 157652	574 bp downstream
Tssr157653	transcription start site region 157653	691 bp downstream
Tssr157654	transcription start site region 157654	734 bp downstream
Tssr157655	transcription start site region 157655	771 bp downstream
Tssr157656	transcription start site region 157656	801 bp downstream
Tssr157657	transcription start site region 157657	923 bp downstream
Tssr157658	transcription start site region 157658	975 bp downstream
Tssr157659	transcription start site region 157659	1078 bp downstream
Tssr157660	transcription start site region 157660	1231 bp downstream
Tssr157661	transcription start site region 157661	1252 bp downstream
Tssr157662	transcription start site region 157662	1357 bp downstream
Tssr157663	transcription start site region 157663	1416 bp downstream
Tssr157664	transcription start site region 157664	1538 bp downstream
Tssr157665	transcription start site region 157665	1545 bp downstream
Tssr157666	transcription start site region 157666	1570 bp downstream
Tssr157667	transcription start site region 157667	1823 bp downstream
Tssr157668	transcription start site region 157668	1870 bp downstream
Tssr157669	transcription start site region 157669	1885 bp downstream
Tssr157670	transcription start site region 157670	1905 bp downstream
Tssr157671	transcription start site region 157671	1922 bp downstream
Tssr157672	transcription start site region 157672	1971 bp downstream
Tssr157673	transcription start site region 157673	1988 bp downstream