rs228925716 SNP Detail

Summary

• ID
  rs228925716
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181101403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAACATCAG GCAGATGAGA
  TGGCTCAGCC TTTAAGAGCC GGTACTGCTC TTGCACGAGG GGCAGCTCCC AGCTGTCTGC
  AACTTCAGCT TCCGGCTCAT CTGAGTCCTT GGTTTGTCAC AGGCACCTGC ACTCATGTGC
  ACATGCCTGC CCCACTTTGC ACATAATTTA AACACATCTT AATTAACATC AACATAGAAG
  Y
  GCTCCCGGAG CTTCCCCCCC CCCCCCCCCC CCCCCCGCCG GCCACTTTTG TTTCTGCGTC
  TGCACAGGCC AGAGGACTGG TCTGTCTCTA GTTCTTCCAT ATCTCAGTGA GTCACAGAGC
  TGGAATTTGA CTGGGGTCTT TATGGCTCCA AAGGGCTAAA AGTCCAGTTA AACTAGCAGA
  TCTCTGACAG GGTTGGGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss352605102	MGP_WTSI_1_183203969	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs228925716					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352605102	MGP_WTSI_1_183203969	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181101403 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1134	CpG island 1134	654 bp distal
Gm39717	predicted gene, 39717	within coordinates
Rr424716	regulatory region 424716	1646 bp distal
Rr424717	regulatory region 424717	309 bp distal
Rr424718	regulatory region 424718	768 bp distal
Rr424719	regulatory region 424719	646 bp distal
Rr424720	regulatory region 424720	within coordinates