rs228936894 SNP Detail

Summary

• ID
  rs228936894
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:57764910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGGGCAT GTGGGCAAAA
  CCTCATTACT GAGAAGCGAG AAAGAGAGAA AAAGGAAGTG GTCAGAGTAC CACAGTCTCC
  TCCGTGTGCA CACTTAGTGA CCCAAAGGCC TCCAGCAGCT GGGTCTCACC TTCAAAGGCG
  CCACTACCTT CCAATAGCAG CACCCTGAGG AGCAAGCCTT TGCCACGGGG GGGGGGTGGG
  K
  GGGGGGGGGG TGACGGACGA CTTAAGTTAC AAACTGTAGC AAGTAAGAGA TGTAGGGCCC
  AGCAGGCATG CTGCGGTGCT TCCAGGAGAC AAGGAGGGCC TCAGCTGAGG CGGCAGAGTG
  GAAAGAGACA GGAACAAGGA TACTGAAAAG GGAGGGCTGG CTGAGTAGCT GGCTGAGTAG
  CAGGAAGGGG TGAGGGGGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CAST/EiJ	CZECHII/EiJ	SWR/J
ss391194866	MGP_WTSI_14_58146290	EVA_MGPV3	EVA_MGPV3	f	SNP	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CAST/EiJ	CZECHII/EiJ	SWR/J
rs228936894					SNP	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391194866	MGP_WTSI_14_58146290	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:57764910 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6542	CpG island 6542	1400 bp distal
Il17d	interleukin 17D	within coordinates
Rr389707	regulatory region 389707	1958 bp upstream
Rr404129	regulatory region 404129	1663 bp downstream
Rr492826	regulatory region 492826	1933 bp proximal
Tssr128966	transcription start site region 128966	1986 bp upstream
Tssr128967	transcription start site region 128967	1928 bp upstream
Tssr128968	transcription start site region 128968	1808 bp upstream