rs228938403 SNP Detail

Summary

• ID
  rs228938403
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170785002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTGGGGG AAACGGAGTC
  TAAACTCTCA TGCAAAACAT GGCCATGTTG GGGTTGAAGA GATGCCTCAC TGGTTAAGAG
  CACTGGCTGC TCTTCCAAAG GGCCCAGGTT CAATTCCCAG CACCCATTTG GCAGCTCACA
  ACTCTCTGTA ACTCCATGGA TACAATACCC AAGAAAACAC AAATGCACAT AAAATGTGTC
  Y
  TTTTTTTTTT TTTTTTTTTT TTTTCGAGAT AGGGTTTCTC TGAGTAGCCC TGGCTGTCCT
  AAAACTCACT CTGTAGACCA GGTTGGCCTC GAACTCAGAA ATCCGCCTGC CTCTGCCTCC
  CAAGTGCTGG GATTAAAGGC GTGCGCCACC ATAGCCCATC TAATATGTCC TATTTTTAAA
  AGGCCATGTT ATAAGAGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	QSi5/Ianm	RF/J	SM/J	ST/bJ	SWR/J
ss352376558	MGP_WTSI_1_172887564	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	C	C	C	T	T	T	C	C	C	C	C	C	C	C	T	C	C	C	C	T	T	C	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	QSi5/Ianm	RF/J	SM/J	ST/bJ	SWR/J
rs228938403					SNP	T	T	T	C	C	C	C	T	T	T	C	C	C	C	C	C	C	C	T	C	C	C	C	T	T	C	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352376558	MGP_WTSI_1_172887564	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170785002 () rs orientation: forward

Symbol	Name	Function Class
Fcgr2b	Fc receptor, IgG, low affinity IIb	1184 bp downstream
Gm70986	predicted gene, 70986	within coordinates
Rr20517	regulatory region 20517	1399 bp proximal
Rr20518	regulatory region 20518	1999 bp proximal
Tssr14949	transcription start site region 14949	1462 bp downstream