rs228939313 SNP Detail

Summary

• ID
  rs228939313
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:75715098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCTGTAA CAAGATCTGA
  CTCCCTCTTC TGTAGTGTCT GAAGACAGCT ACAGTGTACT TACTTACATA TAATAAATAA
  ATAAATCTTT AAAAAAAAAA AAAGAAGAAG TGAGGGTAGA TAGCCGGGCA GGCCGGGCAG
  TGATGGGACA CACATTTAAT CCTAGCATTC TAGAGACAGG CAGGTGCTCT GGAGGCAAAG
  K
  CAGGAGGATC TCTGAGTTCA AGGCCAGCAT AATCTACAGA GAAAGTTCCA GGACAGCCAA
  GTTAGGCACT GAAGGAGTTG AAAAACAAAA GGTTGGTGAT AATGTCATAA GACAAGGTGC
  CCATGTCCCA GCTCCAGCAA GCAGCAGAAC TCAGCAGCTT CGGGCATGTG GCTCTGGCTT
  TAGAGTCAAG AATAGAAGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394604244	MGP_WTSI_15_75673679	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228939313					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394604244	MGP_WTSI_15_75673679	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:75715098 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7192	CpG island 7192	864 bp distal
Gm34851	predicted gene, 34851	256 bp upstream
Gm62305	predicted gene, 62305	745 bp downstream
Rr390927	regulatory region 390927	227 bp upstream
Rr404450	regulatory region 404450	1067 bp downstream
Rr504550	regulatory region 504550	1345 bp distal
Rr504551	regulatory region 504551	1141 bp distal
Rr504552	regulatory region 504552	670 bp distal
Rr504553	regulatory region 504553	979 bp proximal
Tssr131679	transcription start site region 131679	1116 bp downstream
Tssr134873	transcription start site region 134873	1317 bp upstream
Tssr134874	transcription start site region 134874	1295 bp upstream
Zc3h3	zinc finger CCCH type containing 3	1334 bp upstream