rs228939889 SNP Detail

Summary

• ID
  rs228939889
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138233934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTCCATTC ATTCATCCTC GGGGCGCAGC GCGCACGCCT
  CCGAGGACCG GGTAGATTCT TCCGCTCTTA AGCCACCACC AGATCGTCTG GGAGATAGCC
  W
  ACGAACACTT AATTTTAGAA ATAGGAACTT TCAAGATTAC CTTTTCTTAA ATTAAAAGAA
  AAAACATTTT TTTTTAAAGC ATGGTGGGGG CAGTGGCGC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359912482	MGP_WTSI_3_138191137	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228939889					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359912482	MGP_WTSI_3_138191137	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138233934 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13876	CpG island 13876	within coordinates
Eif4e	eukaryotic translation initiation factor 4E	Intron
Gm64814	predicted gene, 64814	1925 bp upstream
Mir1956	microRNA 1956	1688 bp downstream
Rr398072	regulatory region 398072	944 bp downstream
Rr586156	regulatory region 586156	1984 bp distal
Rr586157	regulatory region 586157	1435 bp distal
Rr586158	regulatory region 586158	867 bp distal
Rr586159	regulatory region 586159	1248 bp distal
Rr586160	regulatory region 586160	within coordinates
Rr586161	regulatory region 586161	508 bp distal
Tssr31989	transcription start site region 31989	1995 bp downstream
Tssr31990	transcription start site region 31990	1737 bp downstream
Tssr31991	transcription start site region 31991	1715 bp downstream
Tssr31992	transcription start site region 31992	1652 bp downstream
Tssr31993	transcription start site region 31993	1622 bp downstream
Tssr31994	transcription start site region 31994	1591 bp downstream
Tssr31995	transcription start site region 31995	1542 bp downstream
Tssr31996	transcription start site region 31996	884 bp downstream
Tssr31997	transcription start site region 31997	421 bp upstream
Tssr35898	transcription start site region 35898	1919 bp upstream
Tssr35899	transcription start site region 35899	1210 bp upstream
Tssr35900	transcription start site region 35900	1171 bp upstream