rs228942348 SNP Detail

Summary

• ID
  rs228942348
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:108531853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCGAAGCA TCATGAGTTA
  CCTCTGGCCT TCTGAATAAA ACTAAAACAT TGGTTCATGA GGTTTGAGCC TGCTGGCTTT
  CAATATCAAA CCAATACCTC CAGCTTGCTG CCTGAAGATC ATAAAACACT CATTTCCTTT
  ATAAAAACAA ACGTATTTTG AAGATTTTAT TTTCTTAATT GTGTATGCAT GTGTCTGTGA
  Y
  TGGGTATGTA TGTACATGTG AGTGCAATGC CTGTGGAGGC CAGAAGAGGA CATAGGTTTC
  TCTGGAACTA GAGTTGTGTG TAGCTGTGAG CCACCAACCA ACCCTTCCCC TTGCTGGAAC
  CTCAATGCAG ATTTTCTGCA ACAACAGAGA ATCTCTGTGT GTCTCTCTGT CTCTCTCTCT
  CTCTGTGTCT CTGTGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322388612	CHEV_7_116076160	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228942348					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108531853 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	1620 bp proximal
D7Mit127	DNA segment, Chr 7, Massachusetts Institute of Technology 127	89 bp proximal
Eif3f	eukaryotic translation initiation factor 3, subunit F	1769 bp upstream
Rr400539	regulatory region 400539	1511 bp upstream
Rr652951	regulatory region 652951	36 bp proximal
Rr652952	regulatory region 652952	1281 bp proximal
Rr652953	regulatory region 652953	1501 bp proximal
Tssr68456	transcription start site region 68456	1759 bp upstream
Tssr68457	transcription start site region 68457	1871 bp upstream