rs228946302 SNP Detail

Summary

• ID
  rs228946302
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25111914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTACAGAGT CCTTTGGGAT
  AAAGAGGGTC CTTTCTTTTT GCTAATGAGG ATTCTGGTAC TGAGAAAGAC TAACTTAATT
  ACCCCAACTT GTTGCTAAAA GAGTATTTTA ATGCACTTGT TGTTGGGTTT GCCATGTTTT
  CTACCCCATT TCTTCCCCAC AAAATCAAAT TAATCTTTGG TGTGCACATG GTTCTGGTGA
  R
  GTAGAAATTA ATCTTGAGCC AGGCATGGTG GCACACCTAT AATACTGGGA CCCAGGATAC
  TGTGGTCGGA AGAGTCCAAG TTTTCGGTCA GCCTGACTAC ATATCAAGAG CCTGTCTCAA
  GGGAGAGAAA AATAGAAGGG AGGAGGACGG ACAAAATAAA GAGGAAGGGA GGGAGAGAAG
  GAGAAGAGAG AATATCATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322121680	CHEV_7_26197508	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228946302					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25111914 () rs orientation: forward

Symbol	Name	Function Class
4732471J01Rik	RIKEN cDNA 4732471J01 gene	within coordinates
Cxcl17	C-X-C motif chemokine ligand 17	within coordinates
Tssr2143	transcription start site region 2143	308 bp downstream
Tssr2144	transcription start site region 2144	458 bp downstream
Tssr2145	transcription start site region 2145	476 bp downstream
Tssr2146	transcription start site region 2146	494 bp downstream
Tssr2147	transcription start site region 2147	537 bp downstream
Tssr71243	transcription start site region 71243	318 bp downstream
Tssr71244	transcription start site region 71244	343 bp downstream
Tssr71245	transcription start site region 71245	356 bp downstream
Tssr71246	transcription start site region 71246	368 bp downstream
Tssr71247	transcription start site region 71247	413 bp downstream