rs228956927 SNP Detail

Summary

• ID
  rs228956927
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:9815102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCAGCCTA GGCAGAGCAA
  GCCCCATCTT TAAAAGCTAT CTAGAGAACA AGCAAAGGCC TGAAACATAA ATCATAAAGA
  ATGAACACAG TGGGAAAACC AGGCCTAGTG GTGTGGCCAA TGTGGCGACC GGGGTGGGGA
  AATCAAGTGC AGGGTACCCA CGGGCAGCAG AGTGAGTTCA AGGCCAGCAT GGGCAATTTA
  W
  TGAGACCTTG CCTCAGAGTG AAAAGTGAAA CCAAGGCTAA AGAGGGGGCT CCAGTGGCAG
  AAACTGTAAT CTTGACTTCA AATGCCACAT AGTAGCTGTG TTCCTTCTGT TGGCTGCACA
  CAAATGCAAC TCAGTGGTCA CTGCATTGTT CACTGGCTTG TTCTCTAATG ACAATGGATG
  GCTCAGAGTC TCACCCTTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395370706	MGP_WTSI_16_9997331	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228956927					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395370706	MGP_WTSI_16_9997331	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:9815102 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7945	CpG island 7945	1211 bp distal
Gm30668	predicted gene, 30668	within coordinates
Grin2a	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	1678 bp upstream
Rr511425	regulatory region 511425	1825 bp distal
Rr511426	regulatory region 511426	1717 bp distal
Rr511427	regulatory region 511427	880 bp proximal
Tssr139896	transcription start site region 139896	1934 bp upstream
Tssr139897	transcription start site region 139897	1895 bp upstream
Tssr139898	transcription start site region 139898	1866 bp upstream
Tssr139899	transcription start site region 139899	1838 bp upstream
Tssr139900	transcription start site region 139900	1795 bp upstream
Tssr139901	transcription start site region 139901	1719 bp upstream
Tssr139902	transcription start site region 139902	1689 bp upstream
Tssr139903	transcription start site region 139903	1657 bp upstream
Tssr139904	transcription start site region 139904	1569 bp upstream
Tssr139905	transcription start site region 139905	1513 bp upstream
Tssr139906	transcription start site region 139906	1420 bp upstream