rs228957898 SNP Detail

Summary

• ID
  rs228957898
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:3287039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGGAGCG GGGAAATGAG
  GTCACCACAC CAACCACAAG TGATGTCACT TCCTGCTTTT TGGGAGCTTT ATGGGCAAGA
  CATCAGGATG GTGGGTGGGG CCAGGCCCAC TGGAAGTGAT GTCATTTTCA GGATTTCTGA
  CTTGTGGGTG GGGCTTCTGT GAGGGGCTGC CAGGAAGTCT GGTATGATGT CACTTCCAGC
  Y
  CCACCCGTCC CTCCCCCAGG AAGACCCAGA GACCTTGACC CTGTGGTGGT GTGTGGCCCT
  GCCCCTTCCA CACCCATTGC AGGCCTCGAC CCTTTTCATC TTATCCCCGC CCACTTCCCA
  ACGCCATTGC ACACTTCCAG CCAAGCCCAC TGTGCCTGGC CATGCCCTCC ACTTCCTGTC
  CCGCCCATCA CCTCAGGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323871537	CHEV_12_3237039	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228957898					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3287039 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4353	CpG island 4353	999 bp distal
Gm60416	predicted gene, 60416	within coordinates
Rab10os	RAB10, member RAS oncogene family, opposite strand	within coordinates
Rr256055	regulatory region 256055	962 bp proximal
Rr265316	regulatory region 265316	238 bp distal
Rr267101	regulatory region 267101	1135 bp proximal
Tssr112476	transcription start site region 112476	1517 bp downstream
Tssr112477	transcription start site region 112477	1238 bp downstream
Tssr112478	transcription start site region 112478	1200 bp downstream
Tssr115578	transcription start site region 115578	1742 bp upstream